Stem-loop sequence rno-mir-107

AccessionMI0000890 (change log)
DescriptionRattus norvegicus miR-107 stem-loop
Gene family MIPF0000024; mir-103
Literature search

29 open access papers mention rno-mir-107
(249 sentences)

Stem-loop 
   -      c      --a    u  u           c   u   a 
5'  uucucu ugcuuu   agcu cu uacaguguugc uug ggc u
    |||||| ||||||   |||| || ||||||||||| ||| ||| g
3'  gagaga acgaaa   ucgg ga auguuacgacg aac uug g
   c      c      cua    -  c           -   -   a
Get sequence
Deep sequencing
1985753 reads, 1.44e+03 reads per million, 509 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 253128250-253128336 [-]
sense
ENSRNOT00000067822 ; Pank1-201; intron 5
Database links

Mature sequence rno-miR-107-5p

Accession MIMAT0017115
Previous IDsrno-miR-107*
Sequence

15 -  

agcuucuuuacaguguugccuugu

 - 38

Get sequence
Deep sequencing1472 reads, 289 experiments
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-107-3p

Accession MIMAT0000826
Previous IDsrno-miR-107
Sequence

52 -  

agcagcauuguacagggcuauca

 - 74

Get sequence
Deep sequencing1984277 reads, 509 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).