Stem-loop sequence mmu-mir-148b

Accession

MI0000617 (change log)

Symbol

MGI:Mir148b

Description

Mus musculus miR-148b stem-loop

Gene family

MIPF0000056; mir-148

Literature search

46 open access papers mention mmu-mir-148b
(331 sentences)

Stem-loop

   caggcacccuu   a       ug         u  a   ------    -  u 
5'            agc uuugagg  aaguucugu au cac      ucag gc g
              ||| |||||||  ||||||||| || |||      |||| ||  
3'            ucg aagcucu  uucaagaca ua gug      aguc cg u
   ------aucuu   a       gu         c  c   acugaa    u  g 

Deep sequencing

799694 reads, 2.32e+03 reads per million, 107 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr15: 103285125-103285221 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000100162 ; Copz1-201; intron 1

Database links

• EntrezGene:Mir148b
• MGI:Mir148b
• RNAcentral:URS000075C734_10090
• miRBase Tracker:MI0000617

Mature sequence mmu-miR-148b-5p

• Accession: MIMAT0017036
• Previous IDs: mmu-miR-148b*
• Sequence: 24 - gaaguucuguuauacacucaggcu - 47
• Deep sequencing: 10699 reads, 101 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS0000113EBB_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-148b-5p
  • miRDB:mmu-miR-148b-5p

Mature sequence mmu-miR-148b-3p

• Accession: MIMAT0000580
• Previous IDs: mmu-miR-148b
• Sequence: 61 - ucagugcaucacagaacuuugu - 82
• Deep sequencing: 788989 reads, 107 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000521626_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-148b-3p
  • miRDB:mmu-miR-148b-3p
  • microrna.org:mmu-miR-148b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).