Stem-loop sequence rno-mir-301a

AccessionMI0000593 (change log)
Previous IDsrno-mir-301
DescriptionRattus norvegicus miR-301a stem-loop
Gene family MIPF0000034; mir-130
Literature search

12 open access papers mention rno-mir-301a
(236 sentences)

   ccugc    ua     ga  ac    c    ---u          ----a       
5'      uggc  cugcu  cg  ugcu ugac    uuauugcacu     cuguac 
        ||||  |||||  ||  |||| ||||    ||||||||||     ||||| u
3'      aucg  gacga  gc  acga acug    gauaacguga     gacaug 
   ----c    --     gg  cu    a    uuau          cgauc       
Get sequence
Deep sequencing
280211 reads, 231 reads per million, 500 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. This rat miRNA has an independently verified homologue in mouse (MI0000401). The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr10: 74417746-74417845 [+]
ENSRNOT00000036098 ; Ska2-201; intron 1
Database links

Mature sequence rno-miR-301a-5p

Accession MIMAT0017026
Previous IDsrno-miR-301a*

24 - 


 - 44

Get sequence
Deep sequencing798 reads, 247 experiments
Evidence experimental; SOLiD [4]
Predicted targets

Mature sequence rno-miR-301a-3p

Accession MIMAT0000552
Previous IDsrno-miR-301;rno-miR-301a

61 - 


 - 83

Get sequence
Deep sequencing278787 reads, 500 experiments
Evidence experimental; cloned [1-3], SOLiD [4]
Predicted targets


PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).