Stem-loop sequence mmu-mir-192

Accession

MI0000551 (change log)

Symbol

MGI:Mir192

Description

Mus musculus miR-192 stem-loop

Gene family

MIPF0000063; mir-192

Literature search

91 open access papers mention mmu-mir-192
(520 sentences)

Stem-loop

   c   c   g g  c         -     a       uacucuu 
5'  gug aca g cu ugaccuaug aauug cagccag       u
    ||| ||| | || ||||||||| ||||| |||||||        
3'  cac ugu u ga acuggauac uuaac gucgguc       u
   c   u   a g  c         c     c       uccucuc 

Deep sequencing

2695821 reads, 3.3e+03 reads per million, 103 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 6264844-6264932 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-192

• mmu-mir-194-2: chr19: 6264643-6264728 [+]
• mmu-mir-192: chr19: 6264844-6264932 [+]

Database links

• EntrezGene:Mirn192
• MGI:Mir192
• RNAcentral:URS000075A498_10090
• miRBase Tracker:MI0000551

Mature sequence mmu-miR-192-5p

• Accession: MIMAT0000517
• Previous IDs: mmu-miR-192
• Sequence: 14 - cugaccuaugaauugacagcc - 34
• Deep sequencing: 2695314 reads, 103 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000155642_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-192-5p
  • miRDB:mmu-miR-192-5p
  • microrna.org:mmu-miR-192-5p

Mature sequence mmu-miR-192-3p

• Accession: MIMAT0017012
• Previous IDs: mmu-miR-192*
• Sequence: 57 - cugccaauuccauaggucacag - 78
• Deep sequencing: 415 reads, 52 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS00000B59A2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-192-3p
  • miRDB:mmu-miR-192-3p

References

1. PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).