Stem-loop sequence mmu-mir-106a

AccessionMI0000406 (change log)
Symbol MGI:Mir106a
DescriptionMus musculus miR-106a stem-loop
Gene family MIPF0000001; mir-17
Literature search

99 open access papers mention mmu-mir-106a
(392 sentences)

       -ca       aa  g     -gu       
5' augu   aagugcu  ca ugcag   agcuuu 
   ||||   |||||||  || |||||   ||||| u
3' uaca   uucacga  gu acguc   uugagu 
       uuc       cc  g     auc       
Get sequence
Deep sequencing
263456 reads, 1.77e+03 reads per million, 107 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

Mouse and human miR-106a (MI0000406 and MI0000113) differ at two positions but the precursor sequences are clearly closely related. The sequences are also related to mir-17 (MI0000071 and MI0000687). The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chrX: 52742503-52742567 [-]
OTTMUST00000042258 ; Kis2-002; exon 2
OTTMUST00000042259 ; Kis2-003; exon 2
OTTMUST00000042260 ; Kis2-004; exon 2
OTTMUST00000042121 ; Kis2-001; exon 3
ENSMUST00000138156 ; Kis2-002; exon 2
ENSMUST00000133214 ; Kis2-003; exon 2
ENSMUST00000154488 ; Kis2-004; exon 2
ENSMUST00000143479 ; Kis2-001; exon 3
Clustered miRNAs
< 10kb from mmu-mir-106a
mmu-mir-106achrX: 52742503-52742567 [-]
mmu-mir-18bchrX: 52742331-52742413 [-]
mmu-mir-20bchrX: 52742113-52742192 [-]
mmu-mir-19b-2chrX: 52741983-52742066 [-]
mmu-mir-92a-2chrX: 52741838-52741928 [-]
mmu-mir-363chrX: 52741693-52741767 [-]
Database links

Mature sequence mmu-miR-106a-5p

Accession MIMAT0000385
Previous IDsmmu-miR-106a

5 - 


 - 27

Get sequence
Deep sequencing263213 reads, 107 experiments
Evidence experimental; cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature sequence mmu-miR-106a-3p

Accession MIMAT0017009
Previous IDsmmu-miR-106a*

41 - 


 - 63

Get sequence
Deep sequencing243 reads, 31 experiments
Evidence experimental; Illumina [4]
Database links
Predicted targets


PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).