Stem-loop sequence mmu-mir-298

Accession

MI0000398 (change log)

Symbol

MGI:Mir298

Description

Mus musculus miR-298 stem-loop

Gene family

MIPF0000206; mir-298

Literature search

27 open access papers mention mmu-mir-298
(136 sentences)

Stem-loop

      gg   uu   a   -       -         uug    u 
5' cca  ccu  ggc gag gagggcu guucuuccc   aguu u
   |||  |||  ||| ||| ||||||| |||||||||   ||||  
3' ggu  gga  ucg cuc cuuccga caaggaggg   ucag a
      ga   -u   a   u       u         ---    u 

Deep sequencing

416377 reads, 825 reads per million, 103 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 174267504-174267585 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-298

• mmu-mir-298: chr2: 174267504-174267585 [-]
• mmu-mir-296: chr2: 174267047-174267125 [-]

Database links

• EntrezGene:Mirn298
• MGI:Mir298
• RNAcentral:URS000075993B_10090
• miRBase Tracker:MI0000398

Mature sequence mmu-miR-298-5p

• Accession: MIMAT0000376
• Previous IDs: mmu-miR-298
• Sequence: 11 - ggcagaggagggcuguucuuccc - 33
• Deep sequencing: 415932 reads, 103 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000561F50_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-298-5p
  • miRDB:mmu-miR-298-5p
  • microrna.org:mmu-miR-298-5p

Mature sequence mmu-miR-298-3p

• Accession: MIMAT0017007
• Previous IDs: mmu-miR-298*
• Sequence: 51 - gaggaacuagccuucucucagcuu - 74
• Deep sequencing: 424 reads, 65 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS0000231A76_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-298-3p
  • miRDB:mmu-miR-298-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).