Stem-loop sequence hsa-mir-548s

Accession

MI0014141 (change log)

Symbol

HGNC:MIR548S

Description

Homo sapiens miR-548s stem-loop

Gene family

MIPF0000317; mir-548

Literature search

42 open access papers mention hsa-mir-548s
(142 sentences)

Stem-loop

   u  c                     u         uuuaa 
5'  ug ugcaaaaauaauugcaguuuu gccauuauu     u
    || ||||||||||||||||||||| |||||||||      
3'  ac acguuuuuauugacgucaaaa cgguaauaa     a
   a  c                     c         uauua 

Deep sequencing

3548 reads, 5.56 reads per million, 126 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 11767444-11767525 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000280495 ; GREB1-006; intron 8

  OTTHUMT00000280490 ; GREB1-001; intron 25

  ENST00000396123 ; GREB1-006; intron 8

  ENST00000234142 ; GREB1-201; intron 24

  ENST00000381486 ; GREB1-001; intron 25

Database links

• EntrezGene:MIR548S
• HGNC:MIR548S
• RNAcentral:URS000075B0EE_9606
• miRBase Tracker:MI0014141

Mature sequence hsa-miR-548s

• Accession: MIMAT0014987
• Sequence: 52 - auggccaaaacugcaguuauuuu - 74
• Deep sequencing: 2727 reads, 121 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000047A67D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548s
  • TargetScanVert:hsa-miR-548s
  • miRDB:hsa-miR-548s
  • microrna.org:hsa-miR-548s

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).