Stem-loop sequence hsa-mir-3123

Accession

MI0014139 (change log)

Symbol

HGNC:MIR3123

Description

Homo sapiens miR-3123 stem-loop

Literature search

2 open access papers mention hsa-mir-3123
(2 sentences)

Stem-loop

         --u        ug      ccau      au 
5' auggau   ugauugaa  auucuc    uuccac  g
   ||||||   ||||||||  ||||||    ||||||  g
3' uaccua   acuaauuu  uaagag    gaggug  a
         ugu        gu      accc      ag 

Deep sequencing

21065 reads, 46.8 reads per million, 126 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr1: 241132272-241132346 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000097467 ; RGS7-004; intron 3

  OTTHUMT00000096721 ; RGS7-003; intron 4

  OTTHUMT00000096720 ; RGS7-002; intron 4

  OTTHUMT00000096719 ; RGS7-001; intron 4

  ENST00000348120 ; RGS7-004; intron 3

  ENST00000366562 ; RGS7-202; intron 3

  ENST00000407727 ; RGS7-204; intron 3

  ENST00000401882 ; RGS7-203; intron 3

  ENST00000366563 ; RGS7-003; intron 4

  ENST00000366564 ; RGS7-002; intron 4

  ENST00000366565 ; RGS7-001; intron 4

  ENST00000331110 ; RGS7-201; intron 4

  ENST00000446183 ; RGS7-205; intron 4

Database links

• EntrezGene:MIR3123
• HGNC:MIR3123
• RNAcentral:URS0000759A78_9606
• miRBase Tracker:MI0014139

Mature sequence hsa-miR-3123

• Accession: MIMAT0014985
• Sequence: 49 - cagagaauuguuuaauc - 65
• Deep sequencing: 21058 reads, 129 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000939AF_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3123
  • TargetScanVert:hsa-miR-3123
  • miRDB:hsa-miR-3123
  • microrna.org:hsa-miR-3123

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).