Stem-loop sequence mmu-mir-3113

Accession

MI0014111 (change log)

Symbol

MGI:Mir3113

Description

Mus musculus miR-3113 stem-loop

Literature search

1 open access papers mention mmu-mir-3113
(6 sentences)

Stem-loop

   ------    cu  c     u  -u    cu  u  -    c 
5'       ggcc  gg ccggg cc  ggcc  gg cc gggu c
         ||||  || ||||| ||  ||||  || || ||||  
3'       ccgg  cc ggucc gg  ccgg  cc gg cccg u
   ccgguc    -u  u     u  uc    -u  u  u    g 

Deep sequencing

66 reads, 0 reads per million, 31 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 151859562-151859637 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000046396 ; Huwe1-001; intron 14

  OTTMUST00000046226 ; Huwe1-002; intron 16

  OTTMUST00000046227 ; Huwe1-003; intron 17

  OTTMUST00000046228 ; Huwe1-004; exon 17

  OTTMUST00000046230 ; Huwe1-006; exon 18

  OTTMUST00000046229 ; Huwe1-005; exon 18

  ENSMUST00000112622 ; Huwe1-001; intron 14

  ENSMUST00000026292 ; Huwe1-002; intron 16

  ENSMUST00000153687 ; Huwe1-003; intron 17

  ENSMUST00000130243 ; Huwe1-004; exon 17

  ENSMUST00000131786 ; Huwe1-006; exon 18

  ENSMUST00000150020 ; Huwe1-005; exon 18

Database links

• EntrezGene:Mir3113
• MGI:Mir3113
• RNAcentral:URS0000798FC6_10090
• miRBase Tracker:MI0014111

Mature sequence mmu-miR-3113-5p

• Accession: MIMAT0014959
• Previous IDs: mmu-miR-3113
• Sequence: 14 - guccuggcccugguccgggucc - 35
• Deep sequencing: 45 reads, 19 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000479900_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3113-5p
  • miRDB:mmu-miR-3113-5p

Mature sequence mmu-miR-3113-3p

• Accession: MIMAT0014960
• Previous IDs: mmu-miR-3113*
• Sequence: 45 - uccuggcccugguccugguc - 64
• Deep sequencing: 17 reads, 13 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3113-3p
  • miRDB:mmu-miR-3113-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).