Stem-loop sequence mmu-mir-1912

Accession

MI0014110 (change log)

Symbol

MGI:Mir1912

Description

Mus musculus miR-1912 stem-loop

Gene family

MIPF0000768; mir-1912

Literature search

4 open access papers mention mmu-mir-1912
(5 sentences)

Stem-loop

   u         ggau  g           gg       gauuu 
5'  uagucucua    gu cucauugcaug  cugugua     u
    |||||||||    || |||||||||||  |||||||     u
3'  guuagagau    ca gagugacguac  gacacau     a
   g         aguu  a           aa       aauuu 

Deep sequencing

106 reads, 0 reads per million, 21 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 147009441-147009527 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000045550 ; Htr2c-004; intron 2

  OTTMUST00000045548 ; Htr2c-002; intron 2

  OTTMUST00000045549 ; Htr2c-003; intron 2

  OTTMUST00000045553 ; Htr2c-007; intron 2

  OTTMUST00000045552 ; Htr2c-006; intron 2

  OTTMUST00000045515 ; Htr2c-001; intron 3

  ENSMUST00000112831 ; Htr2c-006; intron 2

  ENSMUST00000134368 ; Htr2c-007; intron 2

  ENSMUST00000156697 ; Htr2c-003; intron 2

  ENSMUST00000036303 ; Htr2c-002; intron 2

  ENSMUST00000131999 ; Htr2c-004; intron 2

  ENSMUST00000096299 ; Htr2c-001; intron 3

Clustered miRNAs

< 10kb from mmu-mir-1912

• mmu-mir-764: chrX: 147002259-147002366 [+]
• mmu-mir-1912: chrX: 147009441-147009527 [+]
• mmu-mir-1264: chrX: 147010601-147010686 [+]

Database links

• EntrezGene:Mir1912
• MGI:Mir1912
• RNAcentral:URS000075BAFA_10090
• miRBase Tracker:MI0014110

Mature sequence mmu-miR-1912-5p

• Accession: MIMAT0014957
• Previous IDs: mmu-miR-1912*
• Sequence: 16 - ugcucauugcaugggcugugua - 37
• Deep sequencing: 21 reads, 10 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-1912-5p
  • miRDB:mmu-miR-1912-5p

Mature sequence mmu-miR-1912-3p

• Accession: MIMAT0014958
• Previous IDs: mmu-miR-1912
• Sequence: 53 - cacagaacaugcagugagaacu - 74
• Deep sequencing: 83 reads, 16 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000272333_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1912-3p
  • miRDB:mmu-miR-1912-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).