Stem-loop sequence mmu-mir-486b

AccessionMI0014103 (change log)
Previous IDsmmu-mir-3107
DescriptionMus musculus miR-486b stem-loop
Gene family MIPF0000220; mir-486
Literature search

72 open access papers mention mmu-mir-486b
(593 sentences)

Stem-loop 
      a      c ca                      ---  ga    
5' ccc cccuga g  uccuguacugagcugccccgag   cu  gca 
   ||| |||||| |  ||||||||||||||||||||||   ||  || c
3' ggg gggacu c  aggacaugacucgacggggcuc   ga  uga 
      a      c cc                      cag  ag
Get sequence
Deep sequencing
3973311 reads, 6.33e+03 reads per million, 103 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr8: 23142573-23142662 [-]
sense
OTTMUST00000065233 ; AC126445.2-001; intron 3
ENSMUST00000141930 ; Gm15816-001; intron 3
antisense
OTTMUST00000094968 ; Ank1-017; intron 2
OTTMUST00000065245 ; Ank1-013; intron 3
OTTMUST00000065246 ; Ank1-014; intron 3
OTTMUST00000065244 ; Ank1-012; intron 4
OTTMUST00000065243 ; Ank1-011; intron 41
OTTMUST00000065237 ; Ank1-005; intron 42
OTTMUST00000065238 ; Ank1-006; intron 42
OTTMUST00000065239 ; Ank1-007; intron 42
OTTMUST00000065240 ; Ank1-008; intron 42
OTTMUST00000065236 ; Ank1-004; intron 43
OTTMUST00000065234 ; Ank1-001; intron 43
OTTMUST00000065247 ; Ank1-003; intron 44
OTTMUST00000065235 ; Ank1-002; intron 44
OTTMUST00000094966 ; Ank1-015; intron 44
OTTMUST00000094967 ; Ank1-016; intron 44
ENSMUST00000093576 ; Mir486-201; exon 1
ENSMUST00000174435 ; Ank1-017; intron 2
ENSMUST00000033947 ; Ank1-013; intron 3
ENSMUST00000130311 ; Ank1-014; intron 3
ENSMUST00000121075 ; Ank1-012; intron 4
ENSMUST00000141784 ; Ank1-011; intron 41
ENSMUST00000110688 ; Ank1-005; intron 42
ENSMUST00000117270 ; Ank1-006; intron 42
ENSMUST00000117662 ; Ank1-007; intron 42
ENSMUST00000117296 ; Ank1-008; intron 42
ENSMUST00000121802 ; Ank1-004; intron 43
ENSMUST00000118733 ; Ank1-001; intron 43
ENSMUST00000123418 ; Ank1-003; intron 44
ENSMUST00000084038 ; Ank1-002; intron 44
ENSMUST00000173248 ; Ank1-015; intron 44
ENSMUST00000173573 ; Ank1-016; intron 44
Clustered miRNAs
< 10kb from mmu-mir-486b
mmu-mir-486bchr8: 23142573-23142662 [-]
mmu-mir-486achr8: 23142555-23142682 [+]
Database links

Mature sequence mmu-miR-486b-5p

Accession MIMAT0014943
Previous IDsmmu-miR-3107-5p
Sequence

15 -  

uccuguacugagcugccccgag

 - 36

Get sequence
Deep sequencing3962805 reads, 102 experiments
Evidence experimental; Illumina [1]
Database links
Predicted targets

Mature sequence mmu-miR-486b-3p

Accession MIMAT0014944
Previous IDsmmu-miR-3107-3p
Sequence

57 -  

cggggcagcucaguacagga

 - 76

Get sequence
Deep sequencing10500 reads, 92 experiments
Evidence experimental; Illumina [1]
Database links
Predicted targets

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).