Stem-loop sequence mmu-mir-3076

Accession

MI0014039 (change log)

Symbol

MGI:Mir3076

Description

Mus musculus miR-3076 stem-loop

Stem-loop

   -aca         -  -c     ca  cuuu 
5'     caggggaag cu  agugc  gc    c
       ||||||||| ||  |||||  ||     
3'     guucccuuc gg  ucacg  cg    u
   agac         u  uc     -c  auuc 

Deep sequencing

666 reads, 1.3 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr14: 30572149-30572208 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000089041 ; Tkt-001; intron 12

  ENSMUST00000022529 ; Tkt-001; intron 12

Database links

• EntrezGene:Mir3076
• MGI:Mir3076
• RNAcentral:URS000075DC7A_10090
• miRBase Tracker:MI0014039

Mature sequence mmu-miR-3076-5p

• Accession: MIMAT0014860
• Sequence: 2 - cacaggggaagcucagugccagcc - 25
• Deep sequencing: 96 reads, 48 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000293942_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3076-5p
  • miRDB:mmu-miR-3076-5p

Mature sequence mmu-miR-3076-3p

• Accession: MIMAT0014861
• Sequence: 37 - cgcacucuggucuucccuugcag - 59
• Deep sequencing: 570 reads, 65 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005B7443_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3076-3p
  • miRDB:mmu-miR-3076-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).