Stem-loop sequence mmu-mir-3070-1

Accession

MI0014032 (change log)

Previous IDs

mmu-mir-3070a

Description

Mus musculus miR-3070-1 stem-loop

Gene family

MIPF0001172; mir-3070

Stem-loop

   gugc   g     -cuga         -cuuga   u  -    cua 
5'     uga ugagg     gccccugac      acc gg gauc   u
       ||| |||||     |||||||||      ||| || ||||    
3'     acu guucc     uggggacug      ugg cc cuag   c
   ---u   -     uuaga         ccaucg   u  u    uac 

Deep sequencing

196 reads, 0 reads per million, 34 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109587943-109588031 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-3070-1

• mmu-mir-493: chr12: 109580233-109580315 [+]
• mmu-mir-337: chr12: 109585789-109585885 [+]
• mmu-mir-3544: chr12: 109585813-109585873 [-]
• mmu-mir-540: chr12: 109586080-109586146 [+]
• mmu-mir-665: chr12: 109586314-109586407 [+]
• mmu-mir-3070-1: chr12: 109587943-109588031 [+]
• mmu-mir-3070-2: chr12: 109588592-109588680 [+]
• mmu-mir-431: chr12: 109590447-109590537 [+]
• mmu-mir-433: chr12: 109591715-109591838 [+]
• mmu-mir-127: chr12: 109592846-109592915 [+]
• mmu-mir-434: chr12: 109594506-109594599 [+]
• mmu-mir-432: chr12: 109594956-109595030 [+]
• mmu-mir-3071: chr12: 109595318-109595397 [-]
• mmu-mir-136: chr12: 109595327-109595388 [+]

Database links

• EntrezGene:Mir3070a
• RNAcentral:URS000075A081_10090
• miRBase Tracker:MI0014032

Mature sequence mmu-miR-3070-5p

• Accession: MIMAT0014846
• Previous IDs: mmu-miR-3070a-5p
• Sequence: 17 - agccccugaccuugaaccuggga - 39
• Deep sequencing: 151 reads, 13 experiments
• Evidence: experimental; Illumina [1]

Mature sequence mmu-miR-3070-3p

• Accession: MIMAT0014847
• Previous IDs: mmu-miR-3070a-3p
• Sequence: 57 - uggugcuaccgucagggguaga - 78
• Deep sequencing: 119 reads, 27 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00002A19E5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3070-3p
  • miRDB:mmu-miR-3070-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).