Stem-loop sequence mmu-mir-3061

Accession

MI0014023 (change log)

Symbol

MGI:Mir3061

Description

Mus musculus miR-3061 stem-loop

Literature search

3 open access papers mention mmu-mir-3061
(5 sentences)

Stem-loop

                        cg g           ggu g  cc 
5' guguacuguggggcagugggc  u aaagguagccu   g uc  c
   |||||||||||||||||||||  | |||||||||||   | ||   
3' uacguggcaccccgucaccug  a uuuccaucgga   c ag  u
                        au g           -au g  uu 

Deep sequencing

1176 reads, 0 reads per million, 78 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 52126746-52126836 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000012505 ; Ppp2ca-001; exon 7

  ENSMUST00000020608 ; Ppp2ca-001; exon 7

  antisense

  ENSMUST00000181262 ; Gm26551-201; intron 1

  ENSMUST00000180832 ; mmu-mir-3061.1-201; exon 1

Database links

• EntrezGene:Mir3061
• MGI:Mir3061
• RNAcentral:URS000075D11E_10090
• miRBase Tracker:MI0014023

Mature sequence mmu-miR-3061-5p

• Accession: MIMAT0014828
• Sequence: 14 - cagugggccgugaaagguagcc - 35
• Deep sequencing: 666 reads, 72 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000046040D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3061-5p
  • miRDB:mmu-miR-3061-5p

Mature sequence mmu-miR-3061-3p

• Accession: MIMAT0014829
• Sequence: 59 - cuaccuuugauaguccacugcc - 80
• Deep sequencing: 505 reads, 66 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000015882D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3061-3p
  • miRDB:mmu-miR-3061-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).