Stem-loop sequence mmu-mir-3060

Accession

MI0014022 (change log)

Symbol

MGI:Mir3060

Description

Mus musculus miR-3060 stem-loop

Literature search

1 open access papers mention mmu-mir-3060
(1 sentences)

Stem-loop

        u  -g      g        -     uc     gaag 
5' gggcg gg  gguggg agugcuuc gugcu  ugguu    a
   ||||| ||  |||||| |||||||| |||||  |||||    g
3' ucugu uc  ccaccc ucacgaag cacga  accag    a
        u  ga      -        a     -u     uaaa 

Deep sequencing

1838 reads, 401 reads per million, 101 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr11: 4139364-4139446 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000011254 ; Rnf215-001; intron 5

  ENSMUST00000003677 ; Rnf215-001; intron 5

Database links

• EntrezGene:Mir3060
• MGI:Mir3060
• RNAcentral:URS000075C3EB_10090
• miRBase Tracker:MI0014022

Mature sequence mmu-miR-3060-5p

• Accession: MIMAT0014826
• Previous IDs: mmu-miR-3060*
• Sequence: 14 - gggagugcuucgugcuucug - 33
• Deep sequencing: 6 reads, 6 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3060-5p
  • miRDB:mmu-miR-3060-5p

Mature sequence mmu-miR-3060-3p

• Accession: MIMAT0014827
• Previous IDs: mmu-miR-3060
• Sequence: 50 - ccauagcacagaagcacuccca - 71
• Deep sequencing: 1569 reads, 86 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000320704_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3060-3p
  • miRDB:mmu-miR-3060-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).