Stem-loop sequence mmu-mir-3058

Accession

MI0004418 (change log)

Symbol

MGI:Mir3058

Description

Mus musculus miR-3058 stem-loop

Literature search

2 open access papers mention mmu-mir-3058
(3 sentences)

Stem-loop

        -c  u    u  g        u  cu      uugaau   u 
5' uccag  gu ggag ca ccacggcu ac  ggaaga      guc a
   |||||  || |||| || |||||||| ||  ||||||      ||| c
3' agguc  cg ucuc gu ggugccga ug  ccuucu      cgg u
        au  u    c  g        c  -u      ----uu   u 

Deep sequencing

227 reads, 14 reads per million, 57 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 95559231-95559321 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000020217 ; Nudt4-201; intron 1

Database links

• EntrezGene:Mir3058
• MGI:Mir3058
• RNAcentral:URS000075DEE0_10090
• miRBase Tracker:MI0004418

Mature sequence mmu-miR-3058-5p

• Accession: MIMAT0014813
• Previous IDs: mmu-miR-3058
• Sequence: 14 - ucagccacggcuuaccuggaaga - 36
• Deep sequencing: 120 reads, 48 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004305CA_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3058-5p
  • miRDB:mmu-miR-3058-5p

Mature sequence mmu-miR-3058-3p

• Accession: MIMAT0014814
• Previous IDs: mmu-miR-3058*
• Sequence: 58 - uuccugucagccgugggugcc - 78
• Deep sequencing: 100 reads, 25 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000034C934_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3058-3p
  • miRDB:mmu-miR-3058-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).