Stem-loop sequence mmu-mir-1298

Accession

MI0004300 (change log)

Symbol

MGI:Mir1298

Description

Mus musculus miR-1298 stem-loop

Gene family

MIPF0000598; mir-1298

Literature search

4 open access papers mention mmu-mir-1298
(6 sentences)

Stem-loop

          u         u    c            ------c       cc 
5' gaggggu aagaguuca ucgg uguccagaugua       ccaagua  c
   ||||||| ||||||||| |||| ||||||||||||       |||||||   
3' cucuucg uuuucaagu aguc acgggucuacau       gguuuau  u
          c         u    a            acauaac       ug 

Deep sequencing

17717 reads, 43.6 reads per million, 39 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 147064905-147065002 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000045550 ; Htr2c-004; intron 2

  OTTMUST00000045548 ; Htr2c-002; intron 2

  OTTMUST00000045549 ; Htr2c-003; intron 2

  OTTMUST00000045553 ; Htr2c-007; intron 2

  OTTMUST00000045552 ; Htr2c-006; intron 2

  OTTMUST00000045515 ; Htr2c-001; intron 3

  ENSMUST00000112831 ; Htr2c-006; intron 2

  ENSMUST00000134368 ; Htr2c-007; intron 2

  ENSMUST00000156697 ; Htr2c-003; intron 2

  ENSMUST00000036303 ; Htr2c-002; intron 2

  ENSMUST00000131999 ; Htr2c-004; intron 2

  ENSMUST00000096299 ; Htr2c-001; intron 3

Database links

• EntrezGene:Mir1298
• MGI:Mir1298
• RNAcentral:URS000075B928_10090
• miRBase Tracker:MI0004300

Mature sequence mmu-miR-1298-5p

• Accession: MIMAT0014809
• Previous IDs: mmu-miR-1298
• Sequence: 14 - uucauucggcuguccagaugua - 35
• Deep sequencing: 9936 reads, 38 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003DF3AE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1298-5p
  • miRDB:mmu-miR-1298-5p

Mature sequence mmu-miR-1298-3p

• Accession: MIMAT0014810
• Previous IDs: mmu-miR-1298*
• Sequence: 66 - caucugggcaacugauugaacu - 87
• Deep sequencing: 7766 reads, 16 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000019904A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1298-3p
  • miRDB:mmu-miR-1298-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).