Stem-loop sequence mmu-mir-1264

Accession

MI0004130 (change log)

Symbol

MGI:Mir1264

Description

Mus musculus miR-1264 stem-loop

Gene family

MIPF0000098; mir-95

Literature search

3 open access papers mention mmu-mir-1264
(3 sentences)

Stem-loop

      gg            c     -    u        aaaaaa 
5' ccu  cauauagcaggu cucaa uaag auuuguug      u
   |||  |||||||||||| ||||| |||| ||||||||      a
3' gga  guguauugucca gaguu auuc uaaacaac      a
      -g            c     u    -        gaagua 

Deep sequencing

428 reads, 0 reads per million, 24 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 147010601-147010686 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000045550 ; Htr2c-004; intron 2

  OTTMUST00000045548 ; Htr2c-002; intron 2

  OTTMUST00000045549 ; Htr2c-003; intron 2

  OTTMUST00000045553 ; Htr2c-007; intron 2

  OTTMUST00000045552 ; Htr2c-006; intron 2

  OTTMUST00000045515 ; Htr2c-001; intron 3

  ENSMUST00000112831 ; Htr2c-006; intron 2

  ENSMUST00000134368 ; Htr2c-007; intron 2

  ENSMUST00000156697 ; Htr2c-003; intron 2

  ENSMUST00000036303 ; Htr2c-002; intron 2

  ENSMUST00000131999 ; Htr2c-004; intron 2

  ENSMUST00000096299 ; Htr2c-001; intron 3

Clustered miRNAs

< 10kb from mmu-mir-1264

• mmu-mir-764: chrX: 147002259-147002366 [+]
• mmu-mir-1912: chrX: 147009441-147009527 [+]
• mmu-mir-1264: chrX: 147010601-147010686 [+]

Database links

• EntrezGene:Mir1264
• MGI:Mir1264
• RNAcentral:URS000075C7EE_10090
• miRBase Tracker:MI0004130

Mature sequence mmu-miR-1264-5p

• Accession: MIMAT0014802
• Sequence: 14 - agguccucaauaaguauuuguu - 35
• Deep sequencing: 174 reads, 18 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003205EB_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1264-5p
  • miRDB:mmu-miR-1264-5p

Mature sequence mmu-miR-1264-3p

• Accession: MIMAT0014803
• Sequence: 55 - caaaucuuauuugagcaccugu - 76
• Deep sequencing: 251 reads, 17 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000618F01_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1264-3p
  • miRDB:mmu-miR-1264-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).