Stem-loop sequence rno-mir-667

Accession

MI0012614 (change log)

Description

Rattus norvegicus miR-667 stem-loop

Gene family

MIPF0000794; mir-667

Literature search

4 open access papers mention rno-mir-667
(9 sentences)

Stem-loop

         --acu     c  u     u ga    -  ag    ccauac 
5' gugggu     ggccu gg gcugg g  gcag ug  cacg      a
   ||||||     ||||| || ||||| |  |||| ||  ||||       
3' cacccg     ccgga cc cgacc c  cguc ac  gugu      u
         gaucc     a  -     - ac    c  -a    cuauau 

Deep sequencing

51828 reads, 20.2 reads per million, 332 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133869570-133869661 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-667

• rno-mir-3579: chr6: 133860473-133860585 [-]
• rno-mir-380: chr6: 133860490-133860566 [+]
• rno-mir-323: chr6: 133861199-133861284 [+]
• rno-mir-758: chr6: 133861498-133861575 [+]
• rno-mir-329: chr6: 133862168-133862264 [+]
• rno-mir-494: chr6: 133864370-133864452 [+]
• rno-mir-679: chr6: 133864564-133864700 [+]
• rno-mir-1193: chr6: 133864698-133864817 [+]
• rno-mir-666: chr6: 133866523-133866621 [+]
• rno-mir-543: chr6: 133866660-133866739 [+]
• rno-mir-495: chr6: 133868288-133868367 [+]
• rno-mir-667: chr6: 133869570-133869661 [+]
• rno-mir-376c: chr6: 133872439-133872522 [+]
• rno-mir-376b: chr6: 133873095-133873180 [+]
• rno-mir-3595: chr6: 133873587-133873706 [-]
• rno-mir-376a: chr6: 133873605-133873686 [+]
• rno-mir-300: chr6: 133874152-133874230 [+]
• rno-mir-381: chr6: 133876615-133876675 [+]
• rno-mir-487b: chr6: 133877124-133877205 [+]
• rno-mir-3576: chr6: 133877812-133877926 [-]
• rno-mir-539: chr6: 133877832-133877907 [+]
• rno-mir-6331: chr6: 133878578-133878700 [+]
• rno-mir-544: chr6: 133879169-133879246 [+]

Database links

• EntrezGene:Mir667
• miRBase Tracker:MI0012614

Mature sequence rno-miR-667-5p

• Accession: MIMAT0017369
• Previous IDs: rno-miR-667*
• Sequence: 15 - cggugcugguggagcagugagcac - 38
• Deep sequencing: 1315 reads, 134 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-667-5p
  • miRDB:rno-miR-667-5p

Mature sequence rno-miR-667-3p

• Accession: MIMAT0012852
• Previous IDs: rno-miR-667
• Sequence: 56 - ugacaccugccacccagcccaa - 77
• Deep sequencing: 50502 reads, 331 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-667-3p
  • miRDB:rno-miR-667-3p
  • microrna.org:rno-miR-667-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).