Stem-loop sequence mmu-mir-1982

Accession

MI0009993 (change log)

Symbol

MGI:Mir1982

Description

Mus musculus miR-1982 stem-loop

Stem-loop

   guugguauugcu      gg ccu   -      aguuc   c 
5'             ugggag  u   ggg gagggg     ugg a
               ||||||  |   ||| ||||||     |||  
3'             acccuc  g   ccc cucucc     acc c
   ---------gac      uu uau   a      ----a   c 

Deep sequencing

248 reads, 1.61 reads per million, 62 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 80828797-80828870 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000111591 ; Oaz1-002; exon 2

  OTTMUST00000111596 ; Oaz1-006; intron 2

  OTTMUST00000111595 ; Oaz1-004; intron 4

  OTTMUST00000111592 ; Oaz1-003; intron 5

  OTTMUST00000111593 ; Oaz1-001; intron 5

  OTTMUST00000111594 ; Oaz1-005; intron 5

  ENSMUST00000179894 ; Oaz1-002; exon 2

  ENSMUST00000179341 ; Oaz1-006; intron 2

  ENSMUST00000179620 ; Oaz1-004; intron 4

  ENSMUST00000177850 ; Oaz1-003; intron 5

  ENSMUST00000180036 ; Oaz1-001; intron 5

  ENSMUST00000179172 ; Oaz1-005; intron 5

  ENSMUST00000060987 ; Oaz1-201; intron 5

Database links

• EntrezGene:Mir1982
• MGI:Mir1982
• RNAcentral:URS000075E530_10090
• miRBase Tracker:MI0009993

Mature sequence mmu-miR-1982-5p

• Accession: MIMAT0009459
• Previous IDs: mmu-miR-1982*
• Sequence: 12 - uugggaggguccuggggagg - 31
• Deep sequencing: 20 reads, 16 experiments
• Evidence: experimental; Illumina [1-3]
• Predicted targets:
  • TargetScanVert:mmu-miR-1982-5p
  • miRDB:mmu-miR-1982-5p
  • microrna.org:mmu-miR-1982-5p

Mature sequence mmu-miR-1982-3p

• Accession: MIMAT0009460
• Previous IDs: mmu-miR-1982.1
• Sequence: 52 - ucucacccuauguucucccacag - 74
• Deep sequencing: 225 reads, 53 experiments
• Evidence: experimental; Illumina [1-3]
• Database links:
  • RNAcentral:URS0000591819_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1982-3p
  • miRDB:mmu-miR-1982-3p
  • microrna.org:mmu-miR-1982-3p

References

1. PMID:18923076 "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs" Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R Genes Dev. 22:2773-2785(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).