Stem-loop sequence mmu-mir-1981

Accession

MI0009992 (change log)

Symbol

MGI:Mir1981

Description

Mus musculus miR-1981 stem-loop

Literature search

4 open access papers mention mmu-mir-1981
(5 sentences)

Stem-loop

   ---g       ug  c     cg    cu   g ug     u 
5'     uaaaggc  gg uuaga  uggc  uug g  uggaa g
       |||||||  || |||||  ||||  ||| |  ||||| c
3'     guuuccg  cc aaucu  accg  aau u  gccuu a
   gaca       gu  c     --    cc   g uu     c 

Deep sequencing

157702 reads, 206 reads per million, 104 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 184822407-184822488 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000088664 ; Mosc2-009; intron 1

  OTTMUST00000088661 ; Mosc2-006; intron 2

  OTTMUST00000088662 ; Mosc2-007; intron 2

  OTTMUST00000088663 ; Mosc2-008; intron 2

  OTTMUST00000088659 ; Mosc2-004; intron 4

  OTTMUST00000088656 ; Mosc2-001; intron 5

  OTTMUST00000088658 ; Mosc2-003; intron 5

  ENSMUST00000161341 ; Marc2-009; intron 1

  ENSMUST00000161359 ; Marc2-006; intron 2

  ENSMUST00000162261 ; Marc2-008; intron 2

  ENSMUST00000162866 ; Marc2-007; intron 2

  ENSMUST00000159293 ; Marc2-004; intron 4

  ENSMUST00000068725 ; Marc2-001; intron 5

  ENSMUST00000161821 ; Marc2-003; intron 5

Database links

• EntrezGene:Mir1981
• MGI:Mir1981
• RNAcentral:URS000075BFD6_10090
• miRBase Tracker:MI0009992

Mature sequence mmu-miR-1981-5p

• Accession: MIMAT0009458
• Previous IDs: mmu-miR-1981
• Sequence: 1 - guaaaggcugggcuuagacguggc - 24
• Deep sequencing: 154032 reads, 103 experiments
• Evidence: experimental; Illumina [1,3]
• Database links:
  • RNAcentral:URS00003F97C5_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1981-5p
  • miRDB:mmu-miR-1981-5p
  • microrna.org:mmu-miR-1981-5p

Mature sequence mmu-miR-1981-3p

• Accession: MIMAT0017351
• Previous IDs: mmu-miR-1981*
• Sequence: 60 - caucuaacccuggccuuugac - 80
• Deep sequencing: 3668 reads, 98 experiments
• Evidence: experimental; 454 [2], Illumina [3]
• Database links:
  • RNAcentral:URS0000161A01_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1981-3p
  • miRDB:mmu-miR-1981-3p

References

1. PMID:18923076 "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs" Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R Genes Dev. 22:2773-2785(2008).
2. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).