Stem-loop sequence mmu-mir-1967

Accession

MI0009964 (change log)

Symbol

MGI:Mir1967

Description

Mus musculus miR-1967 stem-loop

Stem-loop

     --u         u    u      uu c     u  ucu 
5' cc   gaauucugu ucuu cucucu  g uccuu ug   g
   ||   ||||||||| |||| ||||||  | ||||| ||   a
3' gg   cuuaagacg agaa gagggg  c aggag ac   c
     ucc         u    -      uc u     u  uua 

Deep sequencing

68 reads, 350 reads per million, 36 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 124022641-124022722 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000064647 ; AC114005.5-001; intron 1

  OTTMUST00000095161 ; Urb2-002; intron 1

  ENSMUST00000127664 ; Gm20388-001; intron 1

  ENSMUST00000173168 ; Urb2-002; intron 1

Database links

• EntrezGene:Mir1967
• MGI:Mir1967
• RNAcentral:URS000075BA58_10090
• miRBase Tracker:MI0009964

Mature sequence mmu-miR-1967

• Accession: MIMAT0009440
• Sequence: 48 - ugaggauccuggggagaagaugc - 70
• Deep sequencing: 52 reads, 26 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000223421_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1967
  • miRDB:mmu-miR-1967
  • microrna.org:mmu-miR-1967

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).