Stem-loop sequence mmu-mir-669m-1

Accession

MI0009943 (change log)

Symbol

MGI:Mir669m-1

Description

Mus musculus miR-669m-1 stem-loop

Gene family

MIPF0000316; mir-467

Literature search

11 open access papers mention mmu-mir-669m-1
(16 sentences)

Stem-loop

   u   --     a   g      gu        c     c    g   au 
5'  gua  ugugc ugu uguaua  uuugugug augug augu ugu  a
    |||  ||||| ||| ||||||  |||||||| ||||| |||| |||   
3'  cau  acacg acg acauau  aaacacac uacau uaca aua  u
   a   ag     a   a      ac        c     a    g   ag 

Deep sequencing

6574 reads, 639 reads per million, 102 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10512790-10512887 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669m-1

• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir669m-1
• MGI:Mir669m-1
• RNAcentral:URS000075E910_10090
• miRBase Tracker:MI0009943

Mature sequence mmu-miR-669m-5p

• Accession: MIMAT0017346
• Sequence: 25 - ugugugcaugugcauguguguau - 47
• Deep sequencing: 11075 reads, 100 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00001DCEC8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669m-5p
  • miRDB:mmu-miR-669m-5p

Mature sequence mmu-miR-669m-3p

• Accession: MIMAT0009419
• Previous IDs: mmu-miR-669m
• Sequence: 58 - auauacauccacacaaacauau - 79
• Deep sequencing: 1546 reads, 63 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000003CF0C_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669m-3p
  • miRDB:mmu-miR-669m-3p
  • microrna.org:mmu-miR-669m-3p

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).