Stem-loop sequence mmu-mir-1929

Accession

MI0009918 (change log)

Symbol

MGI:Mir1929

Description

Mus musculus miR-1929 stem-loop

Stem-loop

           g g     u      a      a    a   gu ug a 
5' uuagaacu g agguc ucuagg cuuuau gagc gag  u  c g
   |||||||| | ||||| |||||| |||||| |||| |||  |  | c
3' agucuugg u uccgg ggaucc gaggua cucg cuc  a  g c
           g -     u      a      -    a   ac gu u 

Deep sequencing

1325 reads, 0 reads per million, 70 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 44359676-44359768 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000039286 ; Atg5-201; intron 7

Database links

• EntrezGene:Mir1929
• MGI:Mir1929
• RNAcentral:URS000075E9F7_10090
• miRBase Tracker:MI0009918

Mature sequence mmu-miR-1929-5p

• Accession: MIMAT0009392
• Previous IDs: mmu-miR-1929
• Sequence: 17 - uucuaggacuuuauagagcagag - 39
• Deep sequencing: 1309 reads, 65 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005386B6_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1929-5p
  • miRDB:mmu-miR-1929-5p
  • microrna.org:mmu-miR-1929-5p

Mature sequence mmu-miR-1929-3p

• Accession: MIMAT0022729
• Sequence: 59 - cagcucauggagaccuaggugg - 80
• Deep sequencing: 14 reads, 13 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000315EBC_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1929-3p
  • miRDB:mmu-miR-1929-3p

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).