Stem-loop sequence mmu-mir-1199

Accession

MI0006307 (change log)

Symbol

MGI:Mir1199

Description

Mus musculus miR-1199 stem-loop

Gene family

MIPF0001659; mir-1199

Literature search

3 open access papers mention mmu-mir-1199
(15 sentences)

Stem-loop

   ----------------agccu cg           -- u     uc           g   agga      
5'                      g  ccggagccggg  g cugag  ccggucgcgcg gcg    acuca 
                        |  |||||||||||  | |||||  ||||||||||| |||    |||| u
3'                      c  ggccucggccc  c gacuc  ggccggcgugc cgu    ugagu 
   aggucccgcgcgccgucgccu au           gg u     gu           g   ----      

Deep sequencing

992 reads, 4.55 reads per million, 44 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr8: 84011515-84011633 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-1199

• mmu-mir-1199: chr8: 84011515-84011633 [-]
• mmu-mir-8111: chr8: 84005628-84005764 [+]

Database links

• EntrezGene:Mir1199
• MGI:Mir1199
• RNAcentral:URS000075DC4E_10090
• miRBase Tracker:MI0006307

Mature sequence mmu-miR-1199-5p

• Accession: MIMAT0005860
• Previous IDs: mmu-miR-1199
• Sequence: 21 - ucugagucccggucgcgcgg - 40
• Deep sequencing: 907 reads, 37 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS00005374D8_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1199-5p
  • miRDB:mmu-miR-1199-5p
  • microrna.org:mmu-miR-1199-5p

Mature sequence mmu-miR-1199-3p

• Accession: MIMAT0017333
• Previous IDs: mmu-miR-1199*
• Sequence: 65 - ugcggccggugcucagucggc - 85
• Deep sequencing: 73 reads, 18 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mmu-miR-1199-3p
  • miRDB:mmu-miR-1199-3p

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).