Stem-loop sequence mmu-mir-669i

Accession

MI0006288 (change log)

Symbol

MGI:Mir669i

Description

Mus musculus miR-669i stem-loop

Gene family

MIPF0000316; mir-467

Literature search

10 open access papers mention mmu-mir-669i
(13 sentences)

Stem-loop

   ---------------------augugaugcccaccaauaa               aguugu       u    uuc 
5'                                         ugugcauguguguau      gugcaua ucau   u
                                           |||||||||||||||      ||||||| ||||    
3'                                         auacguacacacaua      uacguau agua   c
   aguuuuccuauauacugacaguaaggacauacacucaaac               ------       c    uau 

Deep sequencing

692 reads, 3.39 reads per million, 59 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10517604-10517730 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669i

• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir669i
• MGI:Mir669i
• RNAcentral:URS0000759CB7_10090
• miRBase Tracker:MI0006288

Mature sequence mmu-miR-669i

• Accession: MIMAT0005840
• Sequence: 68 - ugcauauacacacaugcauac - 88
• Deep sequencing: 347 reads, 42 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00001CE409_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669i
  • miRDB:mmu-miR-669i
  • microrna.org:mmu-miR-669i

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).