Stem-loop sequence rno-mir-146b

Accession

MI0006342 (change log)

Description

Rattus norvegicus miR-146b stem-loop

Gene family

MIPF0000103; mir-146

Literature search

50 open access papers mention rno-mir-146b
(201 sentences)

Stem-loop

       -  -  u   -  ug        a    a    ----    gaa 
5' uggc ca cc ggc cc  agaacuga uucc uagg    cugu   c
   |||| || || ||| ||  |||||||| |||| ||||    ||||    
3' aucg gu gg ccg gg  ucuugacu aggg aucc    gacg   u
       u  c  u   u  --        c    -    cgua    auc 

Deep sequencing

573357 reads, 464 reads per million, 503 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 266089488-266089575 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir146b
• miRBase Tracker:MI0006342

Mature sequence rno-miR-146b-5p

• Accession: MIMAT0005595
• Previous IDs: rno-miR-146b
• Sequence: 15 - ugagaacugaauuccauaggcugu - 38
• Deep sequencing: 572386 reads, 503 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-146b-5p
  • miRDB:rno-miR-146b-5p
  • microrna.org:rno-miR-146b-5p

Mature sequence rno-miR-146b-3p

• Accession: MIMAT0017334
• Previous IDs: rno-miR-146b*
• Sequence: 55 - ccuagggacucaguucuggug - 75
• Deep sequencing: 963 reads, 222 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-146b-3p
  • miRDB:rno-miR-146b-3p

References

1. PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).