Stem-loop sequence mmu-mir-467c

Accession

MI0005512 (change log)

Symbol

MGI:Mir467c

Description

Mus musculus miR-467c stem-loop

Gene family

MIPF0000316; mir-467

Literature search

19 open access papers mention mmu-mir-467c
(54 sentences)

Stem-loop

   -  -   g     ----aa       ca      --         auuuua 
5'  cc uuu ugcau      gugcgug  uguaua  uguguguau      u
    || ||| |||||      |||||||  ||||||  |||||||||      g
3'  gg aag gcgua      cacguac  acauau  acacacaua      c
   c  u   a     cagaca       ac      cc         cauaua 

Deep sequencing

103298 reads, 442 reads per million, 108 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10473931-10474027 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-467c

• mmu-mir-466m: chr2: 10466663-10466746 [+]
• mmu-mir-466f-1: chr2: 10466944-10467037 [+]
• mmu-mir-669f: chr2: 10467229-10467349 [+]
• mmu-mir-669e: chr2: 10467495-10467613 [+]
• mmu-mir-669b: chr2: 10467790-10467886 [+]
• mmu-mir-669d: chr2: 10468343-10468463 [+]
• mmu-mir-466f-2: chr2: 10468675-10468768 [+]
• mmu-mir-669l: chr2: 10468971-10469068 [+]
• mmu-mir-669d-2: chr2: 10471644-10471729 [+]
• mmu-mir-466f-3: chr2: 10471953-10472046 [+]
• mmu-mir-297a-2: chr2: 10472254-10472343 [+]
• mmu-mir-466o: chr2: 10472540-10472623 [+]
• mmu-mir-467c: chr2: 10473931-10474027 [+]
• mmu-mir-466b-1: chr2: 10474219-10474300 [+]
• mmu-mir-669a-3: chr2: 10474433-10474541 [+]
• mmu-mir-669k: chr2: 10475300-10475426 [+]
• mmu-mir-467a-1: chr2: 10476346-10476418 [+]
• mmu-mir-466b-8: chr2: 10476628-10476713 [+]
• mmu-mir-669a-1: chr2: 10476853-10476949 [+]
• mmu-mir-669g: chr2: 10477150-10477272 [+]
• mmu-mir-669j: chr2: 10477910-10478030 [+]
• mmu-mir-467a-2: chr2: 10478798-10478880 [+]
• mmu-mir-466e: chr2: 10479088-10479171 [+]
• mmu-mir-669a-4: chr2: 10479315-10479401 [+]
• mmu-mir-467b: chr2: 10481248-10481320 [+]
• mmu-mir-466c-1: chr2: 10481534-10481617 [+]
• mmu-mir-669a-5: chr2: 10481761-10481847 [+]
• mmu-mir-467a-3: chr2: 10483678-10483760 [+]

Database links

• EntrezGene:Mir467c
• MGI:Mir467c
• RNAcentral:URS000075A6CF_10090
• miRBase Tracker:MI0005512

Mature sequence mmu-miR-467c-5p

• Accession: MIMAT0004885
• Previous IDs: mmu-miR-467c
• Sequence: 11 - uaagugcgugcauguauaugug - 32
• Deep sequencing: 87619 reads, 101 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000471B2D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-467c-5p
  • miRDB:mmu-miR-467c-5p
  • microrna.org:mmu-miR-467c-5p

Mature sequence mmu-miR-467c-3p

• Accession: MIMAT0017275
• Previous IDs: mmu-miR-467c*
• Sequence: 47 - auauacauacacacaccuauac - 68
• Deep sequencing: 15583 reads, 97 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00003806E6_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-467c-3p
  • miRDB:mmu-miR-467c-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).