Stem-loop sequence mmu-mir-465c-1

Accession

MI0005500 (change log)

Symbol

MGI:Mir465c-1

Description

Mus musculus miR-465c-1 stem-loop

Gene family

MIPF0000384; mir-465

Literature search

8 open access papers mention mmu-mir-465c-1
(33 sentences)

Stem-loop

   --u  aa   c          u   g      ugaugaau 
5'    gc  ugc cuauuuagaa ggc cugauc        a
      ||  ||| |||||||||| ||| ||||||        a
3'    cg  aug gaugaaucuu ccg gacuag        a
   auu  ga   a          u   g      uaaaaaaa 

Deep sequencing

343925 reads, 2.81e+03 reads per million, 60 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66825955-66826035 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-465c-1

• mmu-mir-465b-2: chrX: 66835764-66835842 [-]
• mmu-mir-465c-2: chrX: 66832517-66832597 [-]
• mmu-mir-465b-1: chrX: 66829202-66829280 [-]
• mmu-mir-465c-1: chrX: 66825955-66826035 [-]
• mmu-mir-465d: chrX: 66822656-66822713 [-]

Database links

• EntrezGene:Mir465c-1
• MGI:Mir465c-1
• RNAcentral:URS000075DC56_10090
• miRBase Tracker:MI0005500

Mature sequence mmu-miR-465c-5p

• Accession: MIMAT0004873
• Sequence: 11 - uauuuagaauggcgcugaucug - 32
• Deep sequencing: 297438 reads, 52 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00000A4E70_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-465c-5p
  • miRDB:mmu-miR-465c-5p
  • microrna.org:mmu-miR-465c-5p

Mature sequence mmu-miR-465c-3p

• Accession: MIMAT0004874
• Sequence: 50 - gaucagggccuuucuaaguaga - 71
• Deep sequencing: 390258 reads, 50 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00004AB1CD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-465c-3p
  • miRDB:mmu-miR-465c-3p
  • microrna.org:mmu-miR-465c-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).