Stem-loop sequence mmu-mir-297a-3

Accession

MI0005488 (change log)

Symbol

MGI:Mir297a-3

Description

Mus musculus miR-297a-3 stem-loop

Gene family

MIPF0000204; mir-297

Literature search

12 open access papers mention mmu-mir-297a-3
(15 sentences)

Stem-loop

   --------        auaugua           ------------gca            aa 
5'         cugugugu       ugugugcaugu               uguguguauaug  u
           ||||||||       |||||||||||               ||||||||||||   
3'         gacacaca       acacacguaca               acauacauauac  a
   aguuaaaa        ------a           aacauacccauacac            au 

Deep sequencing

18280 reads, 1.02e+03 reads per million, 110 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10515820-10515921 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-297a-3

• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir297a-3
• MGI:Mir297a-3
• RNAcentral:URS000075CDC8_10090
• miRBase Tracker:MI0005488

Mature sequence mmu-miR-297a-5p

• Accession: MIMAT0000375
• Previous IDs: mmu-miR-297;mmu-miR-297a
• Sequence: 11 - auguaugugugcaugugcaugu - 32
• Deep sequencing: 44321 reads, 109 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000224206_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-297a-5p
  • miRDB:mmu-miR-297a-5p
  • microrna.org:mmu-miR-297a-5p

Mature sequence mmu-miR-297a-3p

• Accession: MIMAT0004864
• Previous IDs: mmu-miR-297a*
• Sequence: 50 - uauacauacacacauacccaua - 71
• Deep sequencing: 13800 reads, 94 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00000D45B2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-297a-3p
  • miRDB:mmu-miR-297a-3p
  • microrna.org:mmu-miR-297a-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).