Stem-loop sequence mmu-mir-673

Accession

MI0004601 (change log)

Symbol

MGI:Mir673

Description

Mus musculus miR-673 stem-loop

Gene family

MIPF0000405; mir-673

Literature search

9 open access papers mention mmu-mir-673
(10 sentences)

Stem-loop

   u    cc       --cu     --   u      u     uc  ga 
5'  ggag  ugagggg    cacag  cuc gguccu ggagc  ca  g
    ||||  |||||||    |||||  ||| |||||| |||||  ||  a
3'  ccuc  guucccc    guguc  gag ucgggg ccucg  gu  a
   a    cc       ccac     uu   -      -     uu  aa 

Deep sequencing

37588 reads, 155 reads per million, 78 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109571990-109572080 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-673

• mmu-mir-770: chr12: 109563692-109563785 [+]
• mmu-mir-673: chr12: 109571990-109572080 [+]
• mmu-mir-493: chr12: 109580233-109580315 [+]

Database links

• EntrezGene:Mir673
• MGI:Mir673
• RNAcentral:URS000075EDDA_10090
• miRBase Tracker:MI0004601

Mature sequence mmu-miR-673-5p

• Accession: MIMAT0003739
• Previous IDs: mmu-miR-673
• Sequence: 15 - cucacagcucugguccuuggag - 36
• Deep sequencing: 32783 reads, 75 experiments
• Evidence: experimental; MPSS [1], cloned [2,4], miRAP-cloned [3], Illumina [5-6]
• Database links:
  • RNAcentral:URS00005FB354_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-673-5p
  • miRDB:mmu-miR-673-5p
  • microrna.org:mmu-miR-673-5p

Mature sequence mmu-miR-673-3p

• Accession: MIMAT0004824
• Sequence: 55 - uccggggcugaguucugugcacc - 77
• Deep sequencing: 4793 reads, 46 experiments
• Evidence: experimental; cloned [4], Illumina [5-6]
• Database links:
  • RNAcentral:URS000019CD2B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-673-3p
  • miRDB:mmu-miR-673-3p
  • microrna.org:mmu-miR-673-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3. PMID:16973894 "Mouse microRNA profiles determined with a new and sensitive cloning method" Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H Nucleic Acids Res. 34:e115(2006).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
6. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).