Stem-loop sequence hsa-mir-624

Accession

MI0003638 (change log)

Symbol

HGNC:MIR624

Description

Homo sapiens miR-624 stem-loop

Gene family

MIPF0000523; mir-624

Literature search

9 open access papers mention hsa-mir-624
(38 sentences)

Stem-loop

   -----------                                   -- ag  g 
5'            aaugcuguuucaagguaguaccaguaccuuguguu  c  ug a
              |||||||||||||||||||||||||||||||||||  |  ||  
3'            uuacgauagaguuccauuaugguuauggaacacaa  g  ac a
   gugaauccaca                                   au ga  c 

Deep sequencing

3274 reads, 0 reads per million, 124 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 31014646-31014742 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000409434 ; RP11-1103G16.1-004; intron 2

  ENST00000552511 ; RP11-1103G16.1-004; intron 2

Database links

• EntrezGene:MIR624
• HGNC:MIR624
• RNAcentral:URS00006A55B0_9606
• miRBase Tracker:MI0003638

Mature sequence hsa-miR-624-5p

• Accession: MIMAT0003293
• Previous IDs: hsa-miR-624;hsa-miR-624*
• Sequence: 16 - uaguaccaguaccuuguguuca - 37
• Deep sequencing: 1748 reads, 114 experiments
• Evidence: experimental; SAGE [1]
• Database links:
  • RNAcentral:URS000031BC7D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-624-5p
  • TargetScanVert:hsa-miR-624-5p
  • miRDB:hsa-miR-624-5p
  • microrna.org:hsa-miR-624-5p

Mature sequence hsa-miR-624-3p

• Accession: MIMAT0004807
• Previous IDs: hsa-miR-624
• Sequence: 54 - cacaagguauugguauuaccu - 74
• Deep sequencing: 1524 reads, 83 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00004E6C7F_9606
• Predicted targets:
  • TargetMiner:hsa-miR-624-3p
  • TargetScanVert:hsa-miR-624-3p
  • miRDB:hsa-miR-624-3p
  • microrna.org:hsa-miR-624-3p

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).