Stem-loop sequence rno-mir-193a

AccessionMI0000936 (change log)
Previous IDsrno-mir-193
DescriptionRattus norvegicus miR-193 stem-loop
Gene family MIPF0000082; mir-193
Literature search

19 open access papers mention rno-mir-193a
(121 sentences)

   gcggac          ag     u     cg   a  a    ggu 
5'       gggagcugag  cuggg cuuug  ggc ag ugag   g
         ||||||||||  ||||| |||||  ||| || ||||    
3'       cccucggcuc  gaccc gaaac  ccg uc acuu   u
   ------          cu     u     au   g  a    gac 
Get sequence
Deep sequencing
52295 reads, 46.2 reads per million, 476 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr10: 67065896-67065981 [+]
ENSRNOT00000053781 ; Mir3549-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-193a
rno-mir-3549chr10: 67065885-67065996 [-]
rno-mir-193achr10: 67065896-67065981 [+]
Database links

Mature sequence rno-miR-193a-5p

Accession MIMAT0004736
Previous IDsrno-miR-193-5p

20 - 


 - 41

Get sequence
Deep sequencing891 reads, 262 experiments
Evidence experimental; cloned [2], SOLiD [3]
Predicted targets

Mature sequence rno-miR-193a-3p

Accession MIMAT0000868
Previous IDsrno-miR-193-3p

54 - 


 - 75

Get sequence
Deep sequencing51379 reads, 474 experiments
Evidence experimental; cloned [1-2], SOLiD [3]
Predicted targets


PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).