Stem-loop sequence rno-mir-30d

Accession

MI0000869 (change log)

Description

Rattus norvegicus miR-30d stem-loop

Gene family

MIPF0000005; mir-30

Literature search

60 open access papers mention rno-mir-30d
(350 sentences)

Stem-loop

   a    u   u u         ccc           guaa  c 
5'  aguc gug c guaaacauc   gacuggaagcu    gc a
    |||| ||| | |||||||||   |||||||||||    ||  
3'  ucgg cau g cguuuguag   cugacuuucga    cg c
   c    u   c u         --a           --ac  a 

Deep sequencing

43905964 reads, 3.58e+04 reads per million, 516 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr7: 109286463-109286544 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir30d
• miRBase Tracker:MI0000869

Mature sequence rno-miR-30d-5p

• Accession: MIMAT0000807
• Previous IDs: rno-miR-30d
• Sequence: 12 - uguaaacauccccgacuggaag - 33
• Deep sequencing: 43529724 reads, 516 experiments
• Evidence: experimental; cloned [1-3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-30d-5p
  • miRDB:rno-miR-30d-5p
  • microrna.org:rno-miR-30d-5p

Mature sequence rno-miR-30d-3p

• Accession: MIMAT0004722
• Previous IDs: rno-miR-30d*
• Sequence: 52 - cuuucagucagauguuugcugc - 73
• Deep sequencing: 376216 reads, 507 experiments
• Evidence: experimental; cloned [3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-30d-3p
  • miRDB:rno-miR-30d-3p
  • microrna.org:rno-miR-30d-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).