Stem-loop sequence rno-mir-10a

Accession

MI0000841 (change log)

Description

Rattus norvegicus miR-10a stem-loop

Gene family

MIPF0000033; mir-10

Literature search

31 open access papers mention rno-mir-10a
(164 sentences)

Stem-loop

   -----gacc   --c    uu        a    g     c          uaaggaa 
5'          ugu   uguc  cuguauau cccu uagau cgaauuugug       u
            |||   ||||  |||||||| |||| ||||| ||||||||||        
3'          aca   acag  gauguaua gggg aucua gcuuaaacac       u
   acucgccuc   aau    uu        a    -     u          ugguguu 

Deep sequencing

152474022 reads, 1.15e+05 reads per million, 510 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr10: 84165950-84166059 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir10a
• miRBase Tracker:MI0000841

Mature sequence rno-miR-10a-5p

• Accession: MIMAT0000782
• Previous IDs: rno-miR-10a
• Sequence: 22 - uacccuguagauccgaauuugug - 44
• Deep sequencing: 152447622 reads, 510 experiments
• Evidence: experimental; cloned [1-2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-10a-5p
  • miRDB:rno-miR-10a-5p
  • microrna.org:rno-miR-10a-5p

Mature sequence rno-miR-10a-3p

• Accession: MIMAT0004709
• Sequence: 63 - caaauucguaucuaggggaaua - 84
• Deep sequencing: 26185 reads, 405 experiments
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-10a-3p
  • miRDB:rno-miR-10a-3p
  • microrna.org:rno-miR-10a-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).