Stem-loop sequence mmu-mir-139

Accession

MI0000693 (change log)

Symbol

MGI:Mir139

Description

Mus musculus miR-139 stem-loop

Gene family

MIPF0000117; mir-139

Literature search

44 open access papers mention mmu-mir-139
(482 sentences)

Stem-loop

   gug       -   u  a            g gg 
5'    uauucua cag gc cgugucuccagu u  c
      ||||||| ||| || |||||||||||| |  u
3'    augaggu guc cg gcgcagaggucg a  c
   -ca       u   c  -            g gg 

Deep sequencing

130435 reads, 2.24e+03 reads per million, 121 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 101475376-101475443 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000163751 ; Pde2a-202; intron 2

  ENSMUST00000084894 ; Pde2a-201; intron 2

  ENSMUST00000166652 ; Pde2a-203; intron 2

Database links

• EntrezGene:Mir139
• MGI:Mir139
• RNAcentral:URS0000306C33_10090
• miRBase Tracker:MI0000693

Mature sequence mmu-miR-139-5p

• Accession: MIMAT0000656
• Previous IDs: mmu-miR-139
• Sequence: 7 - ucuacagugcacgugucuccag - 28
• Deep sequencing: 80780 reads, 100 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00005D2665_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-139-5p
  • miRDB:mmu-miR-139-5p
  • microrna.org:mmu-miR-139-5p

Mature sequence mmu-miR-139-3p

• Accession: MIMAT0004662
• Sequence: 43 - uggagacgcggcccuguuggag - 64
• Deep sequencing: 49545 reads, 85 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00001E519F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-139-3p
  • miRDB:mmu-miR-139-3p
  • microrna.org:mmu-miR-139-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).