Stem-loop sequence mmu-mir-290a

Accession

MI0000388 (change log)

Symbol

MGI:Mir290a

Description

Mus musculus miR-290a stem-loop

Gene family

MIPF0000068; mir-290

Literature search

54 open access papers mention mmu-mir-290a
(420 sentences)

Stem-loop

       u  u    ua  -c      u  g          uuu 
5' cuca cu gcgg  cu  aaacua gg ggcacuuuuu   u
   |||| || ||||  ||  |||||| || ||||||||||   u
3' gagu gg cgcc  ga  uuugau cc ccgugaaaaa   c
       u  c    cc  au      -  g          uuu 

Deep sequencing

48486 reads, 580 reads per million, 40 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 3218626-3218708 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-290a

• mmu-mir-290a: chr7: 3218626-3218708 [+]
• mmu-mir-290b: chr7: 3218638-3218695 [-]
• mmu-mir-291a: chr7: 3218919-3219000 [+]
• mmu-mir-292a: chr7: 3219189-3219270 [+]
• mmu-mir-292b: chr7: 3219198-3219259 [-]
• mmu-mir-291b: chr7: 3219482-3219560 [+]
• mmu-mir-293: chr7: 3220343-3220422 [+]
• mmu-mir-294: chr7: 3220641-3220724 [+]
• mmu-mir-295: chr7: 3220773-3220841 [+]

Database links

• EntrezGene:Mir290
• MGI:Mir290a
• RNAcentral:URS000075C49E_10090
• miRBase Tracker:MI0000388

Mature sequence mmu-miR-290a-5p

• Accession: MIMAT0000366
• Previous IDs: mmu-miR-290
• Sequence: 14 - acucaaacuaugggggcacuuu - 35
• Deep sequencing: 48195 reads, 28 experiments
• Evidence: experimental; cloned [1-2], Northern [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000172999_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-290a-5p
  • miRDB:mmu-miR-290a-5p
  • microrna.org:mmu-miR-290a-5p

Mature sequence mmu-miR-290a-3p

• Accession: MIMAT0004572
• Sequence: 49 - aaagugccgccuaguuuuaagccc - 72
• Deep sequencing: 270 reads, 11 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00001154D6_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-290a-3p
  • miRDB:mmu-miR-290a-3p
  • microrna.org:mmu-miR-290a-3p

References

1. PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).