Stem-loop sequence mmu-mir-150

Accession

MI0000172 (change log)

Symbol

MGI:Mir150

Description

Mus musculus miR-150 stem-loop

Gene family

MIPF0000197; mir-150

Literature search

162 open access papers mention mmu-mir-150
(1581 sentences)

Stem-loop

               ac   u       u -   u 
5' cccugucuccca  ccu guaccag g cug g
   ||||||||||||  ||| ||||||| | ||| c
3' gggauagggggu  gga caugguc c gac c
               cc   -       c a   u 

Deep sequencing

223054 reads, 374 reads per million, 100 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 45121757-45121821 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-150

• mmu-mir-150: chr7: 45121757-45121821 [+]
• mmu-mir-5121: chr7: 45126918-45126991 [-]

Database links

• EntrezGene:Mir150
• MGI:Mir150
• RNAcentral:URS0000759E42_10090
• miRBase Tracker:MI0000172

Mature sequence mmu-miR-150-5p

• Accession: MIMAT0000160
• Previous IDs: mmu-miR-150
• Sequence: 6 - ucucccaacccuuguaccagug - 27
• Deep sequencing: 110295 reads, 99 experiments
• Evidence: experimental; cloned [1-2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000016FD1A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-150-5p
  • miRDB:mmu-miR-150-5p
  • microrna.org:mmu-miR-150-5p

Mature sequence mmu-miR-150-3p

• Accession: MIMAT0004535
• Previous IDs: mmu-miR-150*
• Sequence: 42 - cugguacaggccugggggauag - 63
• Deep sequencing: 112755 reads, 82 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000027FFAF_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-150-3p
  • miRDB:mmu-miR-150-3p
  • microrna.org:mmu-miR-150-3p

References

1. PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).