Stem-loop sequence mmu-mir-760

Accession

MI0004605 (change log)

Symbol

MGI:Mir760

Description

Mus musculus miR-760 stem-loop

Gene family

MIPF0000395; mir-760

Literature search

6 open access papers mention mmu-mir-760
(126 sentences)

Stem-loop

       ag    ccuc   gc   gc  --g    c    u      ac       c    acc 
5' cggg  gaug    ggu  ggg  gc   ucgc cccc caggcc  cagagcc ggau   u
   ||||  ||||    |||  |||  ||   |||| |||| ||||||  ||||||| ||||   c
3' gccc  uugc    cca  ccc  cg   agcg gggg gucugg  gucucgg cuua   a
       cu    ---c   aa   aa  uaa    a    u      --       -    aag 

Deep sequencing

21716 reads, 10.3 reads per million, 97 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr3: 122293585-122293703 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir760
• MGI:Mir760
• RNAcentral:URS000075E591_10090
• miRBase Tracker:MI0004605

Mature sequence mmu-miR-760-5p

• Accession: MIMAT0017245
• Sequence: 33 - ccccucaggccaccagagcccgg - 55
• Deep sequencing: 94 reads, 22 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS00001E535B_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-760-5p
  • miRDB:mmu-miR-760-5p

Mature sequence mmu-miR-760-3p

• Accession: MIMAT0003898
• Previous IDs: mmu-miR-760
• Sequence: 70 - cggcucugggucugugggga - 89
• Deep sequencing: 19672 reads, 92 experiments
• Evidence: experimental; cloned [1-2], RAKE [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS0000512C88_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-760-3p
  • miRDB:mmu-miR-760-3p
  • microrna.org:mmu-miR-760-3p

References

1. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).