Stem-loop sequence mmu-mir-670

Accession

MI0004295 (change log)

Symbol

MGI:Mir670

Description

Mus musculus miR-670 stem-loop

Gene family

MIPF0000734; mir-670

Literature search

2 open access papers mention mmu-mir-670
(2 sentences)

Stem-loop

      uu     ug gc      uc        u     - ug     gaac 
5' ggu  ggagg  g  cugaca  ccugagug augug g  aaccu    u
   |||  |||||  |  ||||||  |||||||| ||||| |  |||||    u
3' ucg  ucucc  c  gacugu  ggacuuac uauac c  uuggg    g
      cu     gu --      ga        c     u cu     uccc 

Deep sequencing

707 reads, 0 reads per million, 49 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 94261300-94261399 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000034269 ; RP23-201G13.1-002; intron 1

  OTTMUST00000034268 ; RP23-201G13.1-001; exon 2

  ENSMUST00000129661 ; E530001K10Rik-002; intron 1

  ENSMUST00000134563 ; E530001K10Rik-001; exon 2

Database links

• EntrezGene:Mir670
• MGI:Mir670
• RNAcentral:URS000075F017_10090
• miRBase Tracker:MI0004295

Mature sequence mmu-miR-670-5p

• Accession: MIMAT0003736
• Previous IDs: mmu-miR-670
• Sequence: 21 - aucccugaguguauguggugaa - 42
• Deep sequencing: 300 reads, 36 experiments
• Evidence: experimental; MPSS [1], RAKE [2], Illumina [3,5]
• Database links:
  • RNAcentral:URS0000457382_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-670-5p
  • miRDB:mmu-miR-670-5p
  • microrna.org:mmu-miR-670-5p

Mature sequence mmu-miR-670-3p

• Accession: MIMAT0017242
• Previous IDs: mmu-miR-670*
• Sequence: 60 - uuuccucauauccauucaggagugu - 84
• Deep sequencing: 398 reads, 38 experiments
• Evidence: experimental; 454 [4], Illumina [5]
• Database links:
  • RNAcentral:URS0000239321_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-670-3p
  • miRDB:mmu-miR-670-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).