Stem-loop sequence mmu-mir-668

Accession

MI0004134 (change log)

Symbol

MGI:Mir668

Description

Mus musculus miR-668 stem-loop

Gene family

MIPF0000357; mir-668

Literature search

6 open access papers mention mmu-mir-668
(31 sentences)

Stem-loop

       a   u   ---        g            
5' ggua gug gcc   ucggguga caugcacuuaa 
   |||| ||| |||   |||||||| |||||||||| u
3' ccau cac cgg   ggcucacu guauguggaug 
       -   c   cuc        -            

Deep sequencing

14517 reads, 31.1 reads per million, 74 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109734732-109734797 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000183620 ; mmu-mir-668.1-201; exon 1

Clustered miRNAs

< 10kb from mmu-mir-668

• mmu-mir-381: chr12: 109726822-109726896 [+]
• mmu-mir-487b: chr12: 109727333-109727414 [+]
• mmu-mir-539: chr12: 109728129-109728202 [+]
• mmu-mir-544: chr12: 109729325-109729402 [+]
• mmu-mir-382: chr12: 109733771-109733846 [+]
• mmu-mir-134: chr12: 109734139-109734209 [+]
• mmu-mir-668: chr12: 109734732-109734797 [+]
• mmu-mir-485: chr12: 109734902-109734974 [+]
• mmu-mir-453: chr12: 109735619-109735700 [+]
• mmu-mir-154: chr12: 109738433-109738498 [+]
• mmu-mir-496a: chr12: 109739119-109739197 [+]
• mmu-mir-377: chr12: 109740510-109740577 [+]
• mmu-mir-541: chr12: 109742409-109742498 [+]
• mmu-mir-409: chr12: 109743158-109743236 [+]
• mmu-mir-412: chr12: 109743289-109743368 [+]
• mmu-mir-369: chr12: 109743418-109743496 [+]
• mmu-mir-410: chr12: 109743715-109743795 [+]

Database links

• EntrezGene:Mir668
• MGI:Mir668
• RNAcentral:URS00006B11BD_10090
• miRBase Tracker:MI0004134

Mature sequence mmu-miR-668-5p

• Accession: MIMAT0017237
• Previous IDs: mmu-miR-668*
• Sequence: 2 - guaagugugccucgggugagcaug - 25
• Deep sequencing: 60 reads, 21 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS000056D933_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-668-5p
  • miRDB:mmu-miR-668-5p

Mature sequence mmu-miR-668-3p

• Accession: MIMAT0003732
• Previous IDs: mmu-miR-668
• Sequence: 43 - ugucacucggcucggcccacuacc - 66
• Deep sequencing: 14452 reads, 73 experiments
• Evidence: experimental; MPSS [1], cloned [2], RAKE [2], Illumina [3]
• Database links:
  • RNAcentral:URS000012AC28_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-668-3p
  • miRDB:mmu-miR-668-3p
  • microrna.org:mmu-miR-668-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:16954537 "Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis" Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E Genome Res. 16:1289-1298(2006).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).