Stem-loop sequence mmu-mir-501

Accession

MI0004703 (change log)

Symbol

MGI:Mir501

Description

Mus musculus miR-501 stem-loop

Gene family

MIPF0000139; mir-500

Literature search

12 open access papers mention mmu-mir-501
(76 sentences)

Stem-loop

       -   ---  -u       c       uc     u   u     aaaa   uau 
5' cuuc ugc   uc  gcucauc ucucuaa  cuuug ccc gggug    ugc   u
   |||| |||   ||  ||||||| |||||||  ||||| ||| |||||    |||   u
3' gagg acg   ag  cgagugg agggguu  ggaac ggg cccac    acg   g
       u   ucu  uc       a       ua     -   -     -gua   uau 

Deep sequencing

67152 reads, 154 reads per million, 105 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 7241243-7241351 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000039775 ; Clcn5-003; intron 2

  OTTMUST00000039776 ; Clcn5-004; intron 3

  OTTMUST00000039777 ; Clcn5-005; intron 3

  ENSMUST00000128319 ; Clcn5-003; intron 2

  ENSMUST00000115746 ; Clcn5-004; intron 3

  ENSMUST00000132126 ; Clcn5-005; intron 3

Clustered miRNAs

< 10kb from mmu-mir-501

• mmu-mir-532: chrX: 7248402-7248497 [-]
• mmu-mir-188: chrX: 7247989-7248056 [-]
• mmu-mir-362: chrX: 7241982-7242046 [-]
• mmu-mir-501: chrX: 7241243-7241351 [-]
• mmu-mir-500: chrX: 7237683-7237774 [-]

Database links

• EntrezGene:Mir501
• MGI:Mir501
• RNAcentral:URS000075A66C_10090
• miRBase Tracker:MI0004703

Mature sequence mmu-miR-501-5p

• Accession: MIMAT0003508
• Previous IDs: mmu-miR-501
• Sequence: 24 - aauccuuugucccugggugaaa - 45
• Deep sequencing: 3668 reads, 94 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00003F8C34_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-501-5p
  • miRDB:mmu-miR-501-5p
  • microrna.org:mmu-miR-501-5p

Mature sequence mmu-miR-501-3p

• Accession: MIMAT0003509
• Previous IDs: mmu-miR-501*
• Sequence: 61 - aaugcacccgggcaaggauuug - 82
• Deep sequencing: 63462 reads, 105 experiments
• Evidence: experimental; MPSS [1], cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000032555E_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-501-3p
  • miRDB:mmu-miR-501-3p
  • microrna.org:mmu-miR-501-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).