Stem-loop sequence rno-mir-499

Accession

MI0003721 (change log)

Description

Rattus norvegicus miR-499 stem-loop

Gene family

MIPF0000173; mir-499

Literature search

44 open access papers mention rno-mir-499
(521 sentences)

Stem-loop

     u  ua        a          g uccu 
5' gc gu  agacuugc gugauguuua c    c
   || ||  |||||||| |||||||||| |     
3' cg cg  ucugaacg cacuacaagu g    u
     u  ug        a          - uacc 

Deep sequencing

135815 reads, 70 reads per million, 470 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr3: 151138862-151138926 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000025859 ; Myh7b-201; intron 18

Database links

• EntrezGene:Mir499
• miRBase Tracker:MI0003721

Mature sequence rno-miR-499-5p

• Accession: MIMAT0003381
• Previous IDs: rno-miR-499
• Sequence: 5 - uuaagacuugcagugauguuu - 25
• Deep sequencing: 134165 reads, 467 experiments
• Evidence: experimental; cloned [1], Northern [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-499-5p
  • miRDB:rno-miR-499-5p
  • microrna.org:rno-miR-499-5p

Mature sequence rno-miR-499-3p

• Accession: MIMAT0017227
• Previous IDs: rno-miR-499*
• Sequence: 42 - aacaucacagcaagucugugcu - 63
• Deep sequencing: 1650 reads, 210 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-499-3p
  • miRDB:rno-miR-499-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).