Stem-loop sequence hsa-mir-646

Accession

MI0003661 (change log)

Symbol

HGNC:MIR646

Description

Homo sapiens miR-646 stem-loop

Gene family

MIPF0000605; mir-646

Literature search

12 open access papers mention hsa-mir-646
(15 sentences)

Stem-loop

   ga   -g      ---   ag     u    acacc      -  a    ug 
5'   uca  gagucu   gcc  uggag cagc     ugcuuu uc ccug  a
     |||  ||||||   |||  ||||| ||||     |||||| || ||||   
3'   ggu  cucgga   cgg  gucuc gucg     acgaag ag ggac  u
   -c   ga      cuc   -a     c    -----      g  a    cc 

Deep sequencing

23 reads, 0 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr20: 60308474-60308567 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000079965 ; CDH4-001; intron 2

  ENST00000543233 ; CDH4-201; intron 1

  ENST00000360469 ; CDH4-001; intron 2

Database links

• EntrezGene:MIR646
• HGNC:MIR646
• miRBase Tracker:MI0003661

Mature sequence hsa-miR-646

• Accession: MIMAT0003316
• Sequence: 61 - aagcagcugccucugaggc - 79
• Deep sequencing: 7 reads, 7 experiments
• Evidence: experimental; SAGE [1]
• Predicted targets:
  • TargetMiner:hsa-miR-646
  • TargetScanVert:hsa-miR-646
  • miRDB:hsa-miR-646
  • microrna.org:hsa-miR-646

References

1. PMID:16505370 "The colorectal microRNAome" Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE Proc Natl Acad Sci U S A. 103:3687-3692(2006).