Stem-loop sequence rno-mir-382

Accession

MI0003548 (change log)

Description

Rattus norvegicus miR-382 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

10 open access papers mention rno-mir-382
(153 sentences)

Stem-loop

         u       -a           ug      - uuu 
5' gguacu gaagaga  guuguucgugg  gauucg c   a
   |||||| |||||||  |||||||||||  |||||| |   c
3' ccauga cuuuuuu  caacaggcacu  cuaagc g   u
         -       ca           ua      a ugu 

Deep sequencing

75880 reads, 99.3 reads per million, 418 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133884178-133884257 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000053748 ; Mir3592-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-382

• rno-mir-381: chr6: 133876615-133876675 [+]
• rno-mir-487b: chr6: 133877124-133877205 [+]
• rno-mir-3576: chr6: 133877812-133877926 [-]
• rno-mir-539: chr6: 133877832-133877907 [+]
• rno-mir-6331: chr6: 133878578-133878700 [+]
• rno-mir-544: chr6: 133879169-133879246 [+]
• rno-mir-3592: chr6: 133884161-133884276 [-]
• rno-mir-382: chr6: 133884178-133884257 [+]
• rno-mir-134: chr6: 133884547-133884619 [+]
• rno-mir-668: chr6: 133885141-133885208 [+]
• rno-mir-485: chr6: 133885299-133885377 [+]
• rno-mir-154: chr6: 133888586-133888669 [+]
• rno-mir-496: chr6: 133889283-133889361 [+]
• rno-mir-377: chr6: 133890690-133890761 [+]
• rno-mir-541: chr6: 133892655-133892744 [+]
• rno-mir-409b: chr6: 133893418-133893497 [-]
• rno-mir-409a: chr6: 133893419-133893495 [+]
• rno-mir-412: chr6: 133893571-133893640 [+]
• rno-mir-3578: chr6: 133893672-133893788 [-]
• rno-mir-369: chr6: 133893693-133893771 [+]
• rno-mir-410: chr6: 133893997-133894072 [+]

Database links

• EntrezGene:Mir382
• miRBase Tracker:MI0003548

Mature sequence rno-miR-382-5p

• Accession: MIMAT0003201
• Previous IDs: rno-miR-382
• Sequence: 13 - gaaguuguucgugguggauucg - 34
• Deep sequencing: 67458 reads, 403 experiments
• Evidence: experimental; cloned [3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-382-5p
  • miRDB:rno-miR-382-5p
  • microrna.org:rno-miR-382-5p

Mature sequence rno-miR-382-3p

• Accession: MIMAT0003202
• Previous IDs: rno-miR-382*
• Sequence: 49 - aaucauucacggacaacacuu - 69
• Deep sequencing: 8421 reads, 295 experiments
• Evidence: experimental; cloned [2], Northern [2], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-382-3p
  • miRDB:rno-miR-382-3p
  • microrna.org:rno-miR-382-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).