Stem-loop sequence rno-mir-376a

Accession

MI0003545 (change log)

Description

Rattus norvegicus miR-376a stem-loop

Gene family

MIPF0000091; mir-368

Literature search

9 open access papers mention rno-mir-376a
(70 sentences)

Stem-loop

   u      u    g  a    c    u      guacaaua 
5'  gauauu aaaa gu gauu uccu cuauga        u
    |||||| |||| || |||| |||| ||||||        u
3'  cuauga uuuu ca cuaa agga gaugcu        a
   a      c    g  c    a    -      aaucagua 

Deep sequencing

27046 reads, 3.25 reads per million, 338 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133873605-133873686 [+]
• Overlapping transcripts:

  antisense

  ENSRNOT00000053651 ; Mir3595-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-376a

• rno-mir-494: chr6: 133864370-133864452 [+]
• rno-mir-679: chr6: 133864564-133864700 [+]
• rno-mir-1193: chr6: 133864698-133864817 [+]
• rno-mir-666: chr6: 133866523-133866621 [+]
• rno-mir-543: chr6: 133866660-133866739 [+]
• rno-mir-495: chr6: 133868288-133868367 [+]
• rno-mir-667: chr6: 133869570-133869661 [+]
• rno-mir-376c: chr6: 133872439-133872522 [+]
• rno-mir-376b: chr6: 133873095-133873180 [+]
• rno-mir-3595: chr6: 133873587-133873706 [-]
• rno-mir-376a: chr6: 133873605-133873686 [+]
• rno-mir-300: chr6: 133874152-133874230 [+]
• rno-mir-381: chr6: 133876615-133876675 [+]
• rno-mir-487b: chr6: 133877124-133877205 [+]
• rno-mir-3576: chr6: 133877812-133877926 [-]
• rno-mir-539: chr6: 133877832-133877907 [+]
• rno-mir-6331: chr6: 133878578-133878700 [+]
• rno-mir-544: chr6: 133879169-133879246 [+]

Database links

• EntrezGene:Mir376a
• miRBase Tracker:MI0003545

Mature sequence rno-miR-376a-5p

• Accession: MIMAT0003197
• Previous IDs: rno-miR-376a*
• Sequence: 13 - gguagauucuccuucuaugag - 33
• Deep sequencing: 14912 reads, 302 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-376a-5p
  • miRDB:rno-miR-376a-5p
  • microrna.org:rno-miR-376a-5p

Mature sequence rno-miR-376a-3p

• Accession: MIMAT0003198
• Previous IDs: rno-miR-376a
• Sequence: 51 - aucguagaggaaaauccacgu - 71
• Deep sequencing: 12048 reads, 261 experiments
• Evidence: experimental; cloned [2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-376a-3p
  • miRDB:rno-miR-376a-3p
  • microrna.org:rno-miR-376a-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).