Stem-loop sequence mmu-mir-546

Accession

MI0003517 (change log)

Symbol

MGI:Mir546

Description

Mus musculus miR-546 stem-loop

Literature search

4 open access papers mention mmu-mir-546
(5 sentences)

Stem-loop

   ------------ccucucuucccaaaa     -  -   u   u   ---       c    u    u 
5'                            cuaaa ca gga cua cau   gguggca ggag cagc a
                              ||||| || ||| ||| |||   ||||||| |||| |||| g
3'                            gauuu gu ccu gau gug   cuaucgu ucuc guug a
   ggagaggaggggucauagugaaacgaa     u  a   u   c   ucc       -    u    u 

Deep sequencing

74 reads, 6.67 reads per million, 30 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr10: 126998440-126998560 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000105255 ; Ctdsp2-201; exon 3

  ENSMUST00000105256 ; Ctdsp2-202; exon 8

Clustered miRNAs

< 10kb from mmu-mir-546

• mmu-mir-26a-2: chr10: 126995530-126995613 [+]
• mmu-mir-546: chr10: 126998440-126998560 [+]

Database links

• EntrezGene:Mir546
• MGI:Mir546
• miRBase Tracker:MI0003517

Mature sequence mmu-miR-546

• Accession: MIMAT0003166
• Sequence: 32 - augguggcacggaguc - 47
• Deep sequencing: 19 reads, 11 experiments
• Evidence: experimental; cloned [1], Illumina [2]
• Predicted targets:
  • TargetScanVert:mmu-miR-546
  • miRDB:mmu-miR-546
  • microrna.org:mmu-miR-546

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).