Stem-loop sequence rno-mir-24-1

AccessionMI0000854 (change log)
DescriptionRattus norvegicus miR-24-1 stem-loop
Gene family MIPF0000041; mir-24
Literature search

41 open access papers mention rno-mir-24-1
(194 sentences)

       g  g   a         ua     ucuca 
5' cucc gu ccu cugagcuga  ucagu     u
   |||| || ||| |||||||||  |||||     u
3' gagg ca gga gacuugacu  gguca     u
       a  a   c         -c     cacac 
Get sequence
Deep sequencing
580423 reads, 362 reads per million, 493 experiments
Confidence Annotation confidence: high
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The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr17: 823968-824035 [+]
ENSRNOT00000053691 ; Mir3074-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-24-1
rno-mir-23bchr17: 823222-823318 [+]
rno-mir-27bchr17: 823461-823557 [+]
rno-mir-3074chr17: 823940-824056 [-]
rno-mir-24-1chr17: 823968-824035 [+]
Database links

Mature sequence rno-miR-24-1-5p

Accession MIMAT0003153
Previous IDsrno-miR-189;rno-miR-24-1*

6 - 


 - 27

Get sequence
Deep sequencing7333 reads, 435 experiments
Evidence experimental; cloned [2-3], Northern [2], SOLiD [5]
Predicted targets

Mature sequence rno-miR-24-3p

Accession MIMAT0000794
Previous IDsrno-miR-24

44 - 


 - 65

Get sequence
Deep sequencing1146242 reads, 492 experiments
Evidence experimental; cloned [1-4], Northern [2], SOLiD [5]
Predicted targets


PMID:15345052 "Microarray analysis of microRNA expression in the developing mammalian brain" Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR Genome Biol. 5:R68(2004).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).