Stem-loop sequence hsa-mir-516b-2

Accession

MI0003167 (change log)

Previous IDs

hsa-mir-516-3

Symbol

HGNC:MIR516B2

Description

Homo sapiens miR-516b-2 stem-loop

Gene family

MIPF0000020; mir-515

Literature search

18 open access papers mention hsa-mir-516b-2
(36 sentences)

Stem-loop

        -u  u      a        uaa          g guuu 
5' ucuca  ga gugacc ucuggagg   gaagcacuuu u    u
   |||||  || |||||| ||||||||   |||||||||| |     
3' agagu  cu cauugg agacuuuc   cuucgugaaa a    g
        uu  -      g        ---          g aagu 

Deep sequencing

832 reads, 0 reads per million, 55 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53725442-53725526 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-516b-2

• hsa-mir-521-2: chr19: 53716594-53716680 [+]
• hsa-mir-520d: chr19: 53720096-53720182 [+]
• hsa-mir-517b: chr19: 53721076-53721142 [+]
• hsa-mir-520g: chr19: 53722166-53722255 [+]
• hsa-mir-516b-2: chr19: 53725442-53725526 [+]
• hsa-mir-526a-2: chr19: 53726922-53726986 [+]
• hsa-mir-518e: chr19: 53729838-53729925 [+]
• hsa-mir-518a-1: chr19: 53731006-53731090 [+]
• hsa-mir-518d: chr19: 53734877-53734963 [+]

Database links

• EntrezGene:MIR516B2
• HGNC:MIR516B2
• RNAcentral:URS00006D6272_9606
• miRBase Tracker:MI0003167

Mature sequence hsa-miR-516b-5p

• Accession: MIMAT0002859
• Previous IDs: hsa-miR-516-5p;hsa-miR-516b
• Sequence: 16 - aucuggagguaagaagcacuuu - 37
• Deep sequencing: 1217 reads, 50 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS000005E7DD_9606
• Predicted targets:
  • TargetMiner:hsa-miR-516b-5p
  • TargetScanVert:hsa-miR-516b-5p
  • miRDB:hsa-miR-516b-5p
  • microrna.org:hsa-miR-516b-5p

Mature sequence hsa-miR-516b-3p

• Accession: MIMAT0002860
• Previous IDs: hsa-miR-516-3p;hsa-miR-516b*;hsa-miR-516a-3p;hsa-miR-516b*;hsa-miR-516a-3p;hsa-miR-516b*
• Sequence: 56 - ugcuuccuuucagagggu - 73
• Deep sequencing: 462 reads, 29 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-516b-3p
  • TargetScanVert:hsa-miR-516b-3p
  • miRDB:hsa-miR-516b-3p
  • microrna.org:hsa-miR-516b-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).