Stem-loop sequence hsa-mir-524

Accession

MI0003160 (change log)

Symbol

HGNC:MIR524

Description

Homo sapiens miR-524 stem-loop

Gene family

MIPF0000020; mir-515

Literature search

16 open access papers mention hsa-mir-524
(251 sentences)

Stem-loop

        u        c  a           a      cuug     
5' ucuca gcugugac cu caaagggaagc cuuucu    ucca 
   ||||| |||||||| || ||||||||||| ||||||    ||| a
3' agagu uggcauug ga guuucccuucg ggaaga    agga 
        u        u  g           c      --aa     

Deep sequencing

121 reads, 2.63 reads per million, 38 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53711002-53711088 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000464185 ; CTD-2245F17.3-001; intron 4

  ENST00000597550 ; CTD-2245F17.3-001; intron 4

Clustered miRNAs

< 10kb from hsa-mir-524

• hsa-mir-520b: chr19: 53701227-53701287 [+]
• hsa-mir-518b: chr19: 53702737-53702819 [+]
• hsa-mir-526a-1: chr19: 53706252-53706336 [+]
• hsa-mir-520c: chr19: 53707453-53707539 [+]
• hsa-mir-518c: chr19: 53708735-53708835 [+]
• hsa-mir-524: chr19: 53711002-53711088 [+]
• hsa-mir-517a: chr19: 53712268-53712354 [+]
• hsa-mir-519d: chr19: 53713347-53713434 [+]
• hsa-mir-521-2: chr19: 53716594-53716680 [+]
• hsa-mir-520d: chr19: 53720096-53720182 [+]

Database links

• EntrezGene:MIR524
• HGNC:MIR524
• RNAcentral:URS000063B6CA_9606
• miRBase Tracker:MI0003160

Mature sequence hsa-miR-524-5p

• Accession: MIMAT0002849
• Previous IDs: hsa-miR-524*
• Sequence: 16 - cuacaaagggaagcacuuucuc - 37
• Deep sequencing: 80 reads, 29 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS00003E236A_9606
• Predicted targets:
  • TargetMiner:hsa-miR-524-5p
  • TargetScanVert:hsa-miR-524-5p
  • miRDB:hsa-miR-524-5p
  • microrna.org:hsa-miR-524-5p

Mature sequence hsa-miR-524-3p

• Accession: MIMAT0002850
• Previous IDs: hsa-miR-524
• Sequence: 53 - gaaggcgcuucccuuuggagu - 73
• Deep sequencing: 34 reads, 9 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-524-3p
  • TargetScanVert:hsa-miR-524-3p
  • miRDB:hsa-miR-524-3p
  • microrna.org:hsa-miR-524-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).